PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9582_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 354aa    MW: 39892.3 Da    PI: 6.647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9582_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.13.2e-18207256255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r +h++ E+rRR++iN++f++Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  RrC9582_p1 207 RSKHSATEQRRRSKINDRFQTLRQLIPNS----DQKRDKASFLLEVIEYIHFLQ 256
                 889*************************9....9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.5E-22204263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-19205264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.257205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-16207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-15207259No hitNo description
SMARTSM003534.3E-14211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MELPQSRVIE AQGGYPKTHD FLQPLERVGT RASAKEEGTR GSVDTAETSS QLKSPYVHNQ  60
HVLPGGIGTY TISHMPYLYH NHLQRVPKPK VSQMFKVSQA SCNERNAVED NSVSNCSSYA  120
ANNGFTLWNE SVEKKGHTRK RQQSQSFMDM IKSAKGSSQE DDLDDDDEEF VTNKGNNTST  180
SQCQRVDLRV RVDGKGHCNE QMPNTPRSKH SATEQRRRSK INDRFQTLRQ LIPNSDQKRD  240
KASFLLEVIE YIHFLQEKVD KHEPPEGTVP VLAEAQAVDM ERQQCLKRAM DTTNSFPVLG  300
QRNSFFSPES PQICPISSSD VAAMDCENLR EEKEVEELSI HKGTISISSV YSQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1496350.0AC149635.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130134.10.0PREDICTED: transcription factor BIM1-like
RefseqXP_013700828.10.0PREDICTED: transcription factor BIM1-like isoform X1
SwissprotQ9LEZ33e-93BIM1_ARATH; Transcription factor BIM1
TrEMBLM4EKN70.0M4EKN7_BRARP; Uncharacterized protein
STRINGBra029354.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1880578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.61e-92bHLH family protein